Publications

Journal papers

Kristensen M, Johnsen AR, Christensen JH (2015) Marine biodegradation of crude oil in temperate and Arctic water samples. Journal of Hazardous Materials 300 (2015) 75–83. doi:10.1016/j.jhazmat.2015.06.046
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Matturro B. and Rossetti S. (2015) GeneCARD-FISH: Detection of tceA and vcrA reductive dehalogenase genes in Dehalococcoides mccartyi by fluorescence in situ hybridization. Journal of Microbiological Methods 110 (2015) 27–32; doi:10.1016/j.mimet.2015.01.005
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Moya Ramírez I, Tsaousi K, Rudden M, Marchant R, Jurado Alameda E, García Román M, Banat IM. (2015) Rhamnolipid and surfactin production from olive oil mill waste as sole carbon source. Bioresour Technol. 2015 Sep 11;198:231-236. doi: 10.1016/j.biortech.2015.09.012.
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Rudden M,  Tsauosi K, Marchant  R , Banat  IM,  Smyth TJ (2015) Development and validation of an ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS) method for the quantitative determination of rhamnolipid congeners. Applied Microbiology and Biotechnology, 2015 Nov;99(21):9177-87. doi: 10.1007/s00253-015-6837-1
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Sevilla E, Yuste L, Rojo F (2015). Marine hydrocarbonoclastic bacteria as whole-cell biosensors for n-alkanes. Microb Biotechnol. 2015 Jul;8(4):693-706. Epub 2015 Apr 15. doi: 10.1111/1751-7915.12286
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Taylor JD and Cunliffe M (2015) Polychaete burrows harbour distinct microbial communities in oil-contaminated coastal sediments. Environmental Microbiology Reports. DOI: 10.1111/1758-2229.12292
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Tobalina L, Bargiela R, Pey J, Herbst F-A, Lores I, Rojo D, Barbas C, Peláez AI, Sánchez J, von Bergen M, Seifert J, Ferrer M, Planes FJ (2015) Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data. Bioinformatics. 2015 Jun 1;31(11):1771-9. doi: 10.1093/bioinformatics/btv036. Epub 2015 Jan 23.
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Genovese M, Crisafi F, Denaro R, Cappello S, Russo D, Calogero R, Santisi S, Catalfamo M, Modica A, Smedile F, Genovese L, Golyshin PN, Giuliano L, Yakimov MM. (2014). Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oil spill simulation. Front. Microbiol., 14 April 2014, 10.3389/fmicb.2014.00162
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Nikolopoulou, M., Pasadakis, N.,  Norf, H., Kalogerakis, N. (2013) Enhanced ex situ bioremediation of crude oil contaminated beach sand by supplementation with nutrients and rhamnolipids.Marine Pollution Bulletin 77 (2013) 37–44
doi:10.1016/j.marpolbul.2013.10.038
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Seifert J, Herbst FA, Halkjaer Nielsen P, Planes FJ, Jehmlich N, Ferrer M, von Bergen M (2013). Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities. Proteomics 2013, 13, 2786–2804, doi: 10.1002/pmic.201200566
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